1) M Lu, W Yao, Y Li, D Ma, Z Zhang, H Wang, X Tang, Y Wang, C Li, D Cheng, H Lin,Y Yin*,J Zhao*, G Zhong*, Broadly effective ACE2 decoy proteins protect mice from lethal SARS-CoV-2 infection.Microbiol Spectr. 2023, 11, e0110023 (*co-corresponding)
2) SM Christie, T Tada,Y Yin, A, Bhardwaj, NR Landau, E Rothenberg, Single-virus tracking reveals variant SARS-CoV-2 splike proteins induce ACE2-independent membrane interations.Sci. Adv. 2022, 8, eabo3977
3) H Xue, A Bhardwaj,Y Yin, C Fijen, A Ephstein, L Zhang, X Ding, JM Pascal, TL VanArsdale, E Rothenberg, A two-step mechanism governing PARP1-DNA retention by PARP inhibitors.Sci. Adv. 2022, 8, eabp0414
4) KE Coleman#,Y Yin#,SKL Lui, S Keegan, D Fenyo, DJ Smith, E Rothenberg, TT Huang, USP1-trapping lesions as a source of DNA replication stress and genomic instability.Nat. Communs. 2022, 13, 1740 (#co-first contribution)
5) Y Yin*,WTC Lee, D Gupta, H Xue, P Tonzi, JA Borowiec, TT Huang, M Modesti, E Rothenberg*, A basal-level activity of ATR links replication fork surveillance and stress response.Mol. Cell2021, 81, 4243-4257 (*co- corresponding)
6) WTC Lee,Y Yin, M Morton, P Tonzi, PP Gwo, D Odermatt, M Modesti, S Cantor, K Gari, T Huang, E Rothenberg, Single-molecule imaging reveals replication fork coupled formation of G-quadruplex structures hinders local replication stress signaling.Nat. Commun. 2021, 12, 2525
7) DR Whelan, WTC Lee, F Marks, YT Kong,Y Yin, E Rothenberg, Super-resolution visualization of distinct stalled and broken replication fork structures.Plos Genetics2020, 16, e1009256
8) T Trcek, TE Douglas, M Grosch,Y Yin, WVI Eagle, ER Gavis, H Shroff, E Rothenberg, R Lehmann, Sequence-Independent Self-Assembly of Germ Granule mRNAs into Homotypic Clusters.Mol. Cell2020, 78, 941-950
9) H Zhang, CL Christensen, R Dries, MG Oser, J Deng, B Diskin, F Li, Y Pan, X Zhang,Y Yin, …, E Rothenberg, G Miller, NS Gary, KK Wong, CDK7 inhibition potentiates genome instability triggering anti-tumor immunity in small cell lung cancer.Cancer Cell2020, 37, 37-54.e9
10) F Pessina, F Giavazzi,Y Yin, …, E Rothenberg, F d’Adda di Fagagna, Functional transcription promoters at DNA double-strand breaks mediate RNA-driven phase separation of damage-response factors.Nat. Cell. Biol. 2019, 21, 1286-1299
11) JC Kim, M Pérez-Hernández, FJ Alvarado, SR Maurya, J Montnach,Y Yin, …, E Rothenberg, A Lundby, HH Valdivia, M Cerrone, M Delmar, Disruption of Ca2+i homeostasis and connexin 43 hemichannel function in the right ventricle precedes overt Arrhythmogenic Cardiomyopathy in Plakophilin-2-deficient mice.Circulation, 2019, 140, 1015-1030
12) TN Moiseeva,Y Yin, …, E Rothenberg, SC Watkins, CJ Bakkenist, An ATR and CHK1 kinase signaling mechanism that limits origin firing during unperturbed DNA replication.Proc. Natl. Acad. Sci. U. S. A. 2019, 116, 13374-13383
13) Y Yin*,WTC Lee, E Rothenberg*, Ultrafast Data Mining of Molecular Assemblies in Multiplexed High-Density Super-Resolution Images.Nat. Commun.2019, 10, 119 (*co- corresponding)
14) P Tonzi,Y Yin, WTC Lee, E Rothenberg, TT Huang, Translesion polymerase kappa-dependent DNA synthesis underlies replication fork recovery.eLife2018, 7, e41426
15) C Nemoz, V Ropars, P Frit, A Gontier, P Drevet, J Yu, R Guérois, A Pitois, A Comte, C Delteil, N Barboule, P Legrand, S Baconnais,Y Yin, S Tadi, E Barbet-Massin, I Berger, E Le Cam, M Modesti, E Rothenberg, P Calsou, XLF and APLF bind to Ku80 on two remote sites to ensure DNA repair by non-homologous end-joining.Nat. Struct. Mol. Biol. 2018, 25, 971-980
16) D Whelan, WTC Lee,Y Yin, DM Ofri, K Bermudez-Hernandez, S Keegan, D Fenyö, E Rothenberg, Spatiotemporal dynamics of homologous recombination repair at single collapsed replication forks.Nat. Commun.2018, 9, 3882
17) J Wang,Y Yin, S Lau, J Sankaran, E Rothenberg, T Wohland, M Meier-Schellersheim, H Knaut, Anosmin1 Shuttles Fgf to Facilitate Its Diffusion, Increase Its Local Concentration, and Induce Sensory Organs. Dev.Cell2018, 46, 751-766
18) G Rona, D Roberti,Y Yin, JK Pagan, H Homer, E Sassani, A Zeke, L Busino, E Rothenberg, M Pagano, PARP1-dependent recruitment of the FBXL10-RNF68-RNF2 ubiquitin ligase to sites of DNA damage controls H2A.Z loading.eLife2018, 7, e38771
19) K Bermudez-Hernandez, S Keegan, D Whelan, DA Reid, J Zagelbaum,Y Yin, S Ma, E Rothenberg, D Fenyö, A method for quantifying molecular interactions using stochastic modelling and Super-Resolution microscopy.Sci. Rep. 2017, 7, 14882
20) DA Reid, MP Conlin,Y Yin, HH Chang, G Watanabe, MR Lieber, DA Ramsden, E Rothenberg, Bridging of double-stranded breaks by nonhomologous end-joining ligation complex is modulated by DNA end chemistry. Nucl. Acids Res. 2017, 45, 1872-1878
21) Y Yin, E Rothenberg, Probing the spatial orgnization of molecular complexes using triple-pair-correlation.Sci. Rep. 2016, 6, 30819
22) H Bi,Y Yin, B Pan, G Li, XS Zhao, Scanning single-molecule fluorescence correlation spectroscopy enables kinetics study of DNA hairpin folding with a time window from microseconds to seconds.J. Phys. Chem. Lett. 2016, 7, 1865-1871.
23) YH Chen#, MJK Jones#,Y Yin#,SB Crist, L Colnaghi, RJ Sims, E Rothenberg, PV Jallepalli, TT Huang, ATR-mediated phosphorylation of FANCI regulates dormant origin firing in response to replication stress.Mol. Cell2015, 58, 323-338 (# co-first contribution)
24) Y Yin#,L Yang#, G Zheng, C Gu, C Yi, C He, Y Gao, XS Zhao, Dynamics of spontaneous flipping of a mismatched base in DNA duplex.Proc. Natl. Acad. Sci. U. S. A.2014, 111, 8043-8048 (# co-first contribution)
25) Y Yin, R Yuan, XS Zhao, Amplitude of Relaxations in Fluorescence Correlation Spectroscopy for Fluorophores that Diffuse Together.J. Phys. Chem. Lett.2013, 4, 304-309.
26) Y Yin, P Wang, X Yang, X Li, C He, XS Zhao, Panorama of DNA hairpin folding observed via diffusion-decelerated fluorescence correlation spectroscopy.Chem. Commun. 2012, 48, 7413-7415.
27) X Li,Y Yin, X Yang, Z Zhi, XS Zhao, Temperature dependence of interaction between double stranded DNA and Cy3 or Cy5.Chem. Phys. Lett. 2011, 513, 271-275.
28) Y Yin, XS Zhao, Kinetics and Dynamics of DNA Hybridization.Acc. Chem. Res. 2011, 44, 1172-1181 (review).
29) Y Yin, X Zhou, XS Zhao, Maximum Entropy Method for Analyses of Fluorescence Correlation Spectra of Oligonucleotide Intra-Chain Collision.Acta Phys. Chim. Sin. 2010, 26, 1087-1092.